Data Archiving and Permissions

Data availability statement

Every empirical research manuscript includes a data-availability statement. It explains where the data supporting the results can be found, or the conditions under which they can be accessed when ethics approval or participant consent restricts sharing. Typical statements read:

• Data in a repository: “The data that support the findings of this study are openly available in [repository] at [DOI or URL].”
• Data on request: “The data that support the findings of this study are available from the corresponding author on reasonable request.”
• Restricted data: “The data are not publicly available because of [ethical, privacy or legal restrictions] and are available from the corresponding author under a data use agreement.”
• Data in the article: “All data generated or analyzed during this study are included in this article and its supplementary files.”

Choosing a repository

Data are deposited in a discipline-specific or general-purpose repository that assigns a persistent identifier, such as a DOI or accession number, and supports FAIR-aligned metadata. Examples include general repositories (Zenodo, Figshare, Dryad, Open Science Framework, Harvard Dataverse), sequence repositories (GenBank, European Nucleotide Archive, DDBJ, Sequence Read Archive) and VEuPathDB for genomic data on parasites and vectors.

Sequences and specimens

New nucleotide and protein sequences are deposited in GenBank, the European Nucleotide Archive or DDBJ before submission, and the accession numbers are given in the article. Species identifications that rest on morphology or sequences state the method, and, where possible, reference specimens are deposited in a recognized museum, collection or biobank with the catalog numbers given in the article.

Code and software

Custom code, statistical analysis scripts and software used to produce the results are shared where possible, for example through Zenodo, GitHub or GitLab, with version numbers, dependencies and enough documentation to reproduce the analysis.

Human participants and privacy

Data from human participants are shared only when this is consistent with the participants’ consent and the ethics approval for the study. Before sharing, authors remove information that could identify a participant, use a controlled-access repository when full de-identification is not possible, and follow applicable data-protection law. Identifiable images or detailed case information are published only with written informed consent for publication from the person concerned, or from a legal guardian.

Secondary data

Authors who analyze existing datasets cite the original data source, follow the conditions of use set by the data provider, acknowledge the data creators and explain how readers can obtain the same data.

Permission to reuse published material

A manuscript that reproduces figures, tables or substantial text published elsewhere needs written permission from the copyright holder, usually the original publisher. Authors supply the permission with the submission and give the source in the caption, for example “Adapted with permission from [citation]”. Material published under CC BY needs attribution but usually no permission.

JPAR articles are published under CC BY 4.0, so they can be reused without asking permission, provided they are credited as set out on the Copyright and License page.

Supplementary material

Supplementary files, such as extended tables, questionnaires, datasets, alignments or video, are welcome. Each file is clearly named, for example “Supplementary_Table_1.xlsx”, and briefly described in the manuscript. Supplementary material is reviewed with the manuscript. For very large files, contact the editorial office before submission.

Questions

For questions about data sharing or permissions, write to the editorial office at info@openaccesspub.org.